Compare studies across gene sets

Compare GATA1 target gene set across erythroid maturation and for DBA/healthy for each study.

Read in processed data and a subset of gene sets.

GSE22552 RMA

Gene set expression by erythroid maturation (GSE22552)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by group1
## Kruskal-Wallis chi-squared = 0.64155, df = 3, p-value = 0.8869

GSE24759 RMA

Gene set expression by erythroid maturation (GSE24759)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by group1
## Kruskal-Wallis chi-squared = 8.2253, df = 4, p-value = 0.08367

GSE41817 RMA

Gene set expression by DBA genotype (O’Brien et al.)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by factor(group1)
## Kruskal-Wallis chi-squared = 0.11872, df = 1, p-value = 0.7304

GSE89540 RMA

Gene set expression by DBA genotype (O’Brien et al.)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by factor(group1)
## Kruskal-Wallis chi-squared = 0.29109, df = 2, p-value = 0.8646

GSE22552 SCAN

Gene set expression by erythroid maturation (GSE22552)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by group1
## Kruskal-Wallis chi-squared = 0.96426, df = 3, p-value = 0.8099

GSE24759 SCAN

Gene set expression by erythroid maturation (GSE24759)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by group1
## Kruskal-Wallis chi-squared = 3.1227, df = 4, p-value = 0.5375

GSE41817 SCAN

Gene set expression by DBA genotype (O’Brien et al.)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by factor(group1)
## Kruskal-Wallis chi-squared = 0.057861, df = 1, p-value = 0.8099

GSE89540 SCAN

Gene set expression by DBA genotype (O’Brien et al.)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by factor(group1)
## Kruskal-Wallis chi-squared = 0.37608, df = 2, p-value = 0.8286

GSE22552 RMA.BN

Gene set expression by erythroid maturation (GSE22552)

GSE24759 RMA.BN

Gene set expression by erythroid maturation (GSE24759)

GSE89540 RMA.BN

Gene set expression by DBA genotype (O’Brien et al.)

GSE22552 SCAN.BN

Gene set expression by erythroid maturation (GSE22552)

GSE24759 SCAN.BN

Gene set expression by erythroid maturation (GSE24759)

GSE89540 SCAN.BN

Gene set expression by DBA genotype (O’Brien et al.)