Compare studies across gene sets

Compare Ribosome biogenesis gene set across erythroid maturation and for DBA/healthy for each study.

Read in processed data and a subset of gene sets.

GSE22552 RMA

Gene set expression by erythroid maturation (GSE22552)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by group1
## Kruskal-Wallis chi-squared = 51.853, df = 3, p-value = 3.22e-11

GSE24759 RMA

Gene set expression by erythroid maturation (GSE24759)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by group1
## Kruskal-Wallis chi-squared = 18.044, df = 4, p-value = 0.00121

GSE41817 RMA

Gene set expression by DBA genotype (O’Brien et al.)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by factor(group1)
## Kruskal-Wallis chi-squared = 0.020673, df = 1, p-value = 0.8857

GSE89540 RMA

Gene set expression by DBA genotype (O’Brien et al.)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by factor(group1)
## Kruskal-Wallis chi-squared = 1.0604, df = 2, p-value = 0.5885

GSE22552 SCAN

Gene set expression by erythroid maturation (GSE22552)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by group1
## Kruskal-Wallis chi-squared = 51.134, df = 3, p-value = 4.582e-11

GSE24759 SCAN

Gene set expression by erythroid maturation (GSE24759)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by group1
## Kruskal-Wallis chi-squared = 49.064, df = 4, p-value = 5.663e-10

GSE41817 SCAN

Gene set expression by DBA genotype (O’Brien et al.)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by factor(group1)
## Kruskal-Wallis chi-squared = 0.010256, df = 1, p-value = 0.9193

GSE89540 SCAN

Gene set expression by DBA genotype (O’Brien et al.)

## 
##  Kruskal-Wallis rank sum test
## 
## data:  val by factor(group1)
## Kruskal-Wallis chi-squared = 1.5573, df = 2, p-value = 0.459

GSE22552 RMA.BN

Gene set expression by erythroid maturation (GSE22552)

GSE24759 RMA.BN

Gene set expression by erythroid maturation (GSE24759)

GSE89540 RMA.BN

Gene set expression by DBA genotype (O’Brien et al.)

GSE22552 SCAN.BN

Gene set expression by erythroid maturation (GSE22552)

GSE24759 SCAN.BN

Gene set expression by erythroid maturation (GSE24759)

GSE89540 SCAN.BN

Gene set expression by DBA genotype (O’Brien et al.)